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Oral presentation

Conformational search of an H3 histone tail by using partial multicanonical MD

Ikebe, Kimiyoshi

no journal, , 

DNA in eukaryotic cells is folded into a compact chromatin structure and stored in a nucleus. However, the chromatin is deformed when the DNA should work. The mechanism of the chromatin de- and re-formation is important for DNA functional regulation and it is noted that it is controlled by chemical modifications to histone tails, which is one of components of a chromatin. In the current study, I try to elucidate the mechanism by reproducing a state of an H3 histone tail, which is a kind of histone tails and has large conformational fluctuation, with a simulation technique, partial McMD. In this presentation, I first introduce about an importance of the histone tail study and partial McMD. Then, we explain a controversial point of partial McMD.

Oral presentation

Conformational sampling simulation of an H3 histone tail by Adaptive Lambda Square Dynamics method

Ikebe, Kimiyoshi; Sakuraba, Shun; Kono, Hidetoshi

no journal, , 

no abstracts in English

Oral presentation

How does an acetylation on a histone tail affect the conformation ?

Ikebe, Kimiyoshi; Sakuraba, Shun; Kono, Hidetoshi

no journal, , 

no abstracts in English

Oral presentation

The Foundation and the application of Adaptive Lambda Square Dynamics (ALSD) simulation for conformational sampling of intrinsically disordered proteins

Ikebe, Kimiyoshi

no journal, , 

no abstracts in English

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